species:   Artha
pid:       MI0005379
parent:    ath-MIR822
paralog:   
locus:     5:897020-897356
matures:   ['UGCGGGAAGCAUUUGCACAUG', 'UGUGCAAAUGCUUUCUACAGG']
srr:       SRR9216053
genome:    /Users/jax/+Genomes/Plant_genomes/Artha.TAIR10_chr_all.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Artha.SRR9216053.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Artha.SRR9216053.cram 5:897020-897356

0 out of bounds
87 alignments
87 proper strand
68 stranded perfect matches

                                               ***********************                                                                                                                                                                                                     ***********************                                               
CGACCUUAAGUAUAAGUAGAUAUAUGGGGAUGUAACGCAUGUUGUUUUCUGCGGGAAGCAUUUGCACAUGUUUCGUGGAGAAUGAAAUCACAUUCCAUACAUGAAUAAUAAUUACCUUUUAGAUAGAACAUCGUACUGCUUGAAAAAACAUGUUAAUGUCAUAAACUUUAUGAUGAAAACACCUAUAAAAAGCGUUUUUUCAAGCAUGUGCUAUCUAUGAAGGUAAUUACUAUUCAUGUAUAAAAUAUGAUUUUAUCCUCCAUAAAACAUGUGCAAAUGCUUUCUACAGGAAACAAUAUACGUUGCAUCCCCAUCUACUUACACUUAAGGUCGUUGU
(((((((((((.((((((((....(((((((((((((.(((((((((((((.(((((((((((((((((((((.((((((.(((((((((.(((..(((((((((((.((((((((((((((((((.(((......(((((((((((((.((((...(((((((...)))))))...))))............)))))))))))))))).))))))).))))))))))).)))))))))))..))).))))))))).)))))).))))))))))))))))))))).))))))))))))).))))))))))))))))))))).)))))))))))....
-------------------------------------------------UGCGGGAAGCAUUUGCACAUG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- l=21 a=42 c
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UGUGCAAAUGCUUUCUACAGG----------------------------------------------- l=21 a=5 c*
-------------------------------------------------UGCGGGAAGCAUUUGCACAUG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- l=21 a=42 ma
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UGUGCAAAUGCUUUCUACAGG----------------------------------------------- l=21 a=5 ma*

-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UCUACUUACACUUAAGGUCGU--- l=21 a=1 
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AUCUACUUACACUU----------- l=14 a=1 
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AUCUACUUACACUUAAGGUCG---- l=21 a=3 
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AUCUACUUACACUUAAGGUCGUU-- l=23 a=1 
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAUCUACUUACACUUAAGGUCG---- l=22 a=2 
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAUCUACUUACACUUAAGGUCa---- l=22 a=1 
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GUUGCAUCCCC------------------------- l=11 a=1 
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACAAUAUACGUUGCAUCCCu------------------------- l=21 a=1 
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAACAAUAUACGUUGCAUCCu-------------------------- l=21 a=2 
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAACAAUAUACGUUGCAUCCC-------------------------- l=21 a=1 
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UGUGCAAAUGCUUUCUACAGG----------------------------------------------- l=21 a=5 (c*,ma*)
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UGUGCAAAUGCUUUCUACAGGu---------------------------------------------- l=22 a=1 
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UGUGCAAAUGCUUUCUACAGGA---------------------------------------------- l=22 a=1 
----------------------------------------------------------------------------------------------CCAUACAUGAAUAAUAAUUACCUU--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- l=24 a=1 
----------------------------------------------------------------------UUUCGUGGAGAAUGAAAUCACA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- l=22 a=1 
--------------------------------------------------GCGGGAAGCAUUUGCACAUG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- l=20 a=2 
--------------------------------------------------GCGGGAAGCAUUUGCACAUGg-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- l=21 a=1 
-------------------------------------------------UGCGGGAAGCAUUUG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- l=15 a=1 
-------------------------------------------------UGCGGGAAGCAUUUGCAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ l=18 a=1 
-------------------------------------------------UGCGGGAAGCAUUUGCACAUG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- l=21 a=42 (c,ma)
-------------------------------------------------UGCGGGAAGCAUUUGCACAUu--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- l=21 a=4 
-------------------------------------------------UGCGGGAAGCAUUUGCACAUa--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- l=21 a=6 
-------------------------------------------------UGuGGGAAGCAUUUGCACAUG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- l=21 a=1 
-------------------------------------------------UGCGGGAAGCAUUUGCACAUGU-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- l=22 a=4 
-------------------------------------------------UGCGGGAAGCAUUUGCACAUGc-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- l=22 a=1 
-------------------------GGGGAUGUAACuCAU--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- l=15 a=1 

mb-01011
ax-1110011
ku-01
ss-111101111111
fn-111
